Article Sidebar

Download
PDF XML SUPPLEMENT
Statistic
Read Counter : 490 Download : 203

Introduction

During the past 25 years, only seven studies have been published about the diversity of marine macroalgae found around the Maltese islands, and these were entirely based on morphological identification (Borg et al. 1998, Lanfranco et al. 1999, Schembri et al. 2005, Evans et al. 2015, Bonnici et al. 2018, ERA 2020). Of all these studies, the only publication focusing solely on macroalgae was a checklist by Cormaci et al. (1997), which reported ‘199 Rhodophyceae, 63 Fucophyceae and 57 Chlorophyceae’, making up a total of 319 macroalgal species in Malta. To date, no DNA studies have been conducted specifically to identify Maltese macroalgae, and indeed, few such studies have been carried out in the Mediterranean area as a whole (Bartolo et al. 2020).

Molecular tools have challenged the idea that marine species have wide geographical ranges. Instead, they have demonstrated that some marine macroalgal ‘species’ actually consist of several geographically restricted cryptic species, i.e. species which are classified as one due to a lack of or only few morphological differences (Payo et al. 2012). Broad distribution ranges of many algae can be attributed to pervasive cryptic diversity (Tronholm et al. 2012). Moreover, molecular assessment of the diversity of macroalgal species has demonstrated that morphological species identification underestimates the diversity in a given location (Payo et al. 2012, Vieira et al. 2017).

For the present study, substrata around the Maltese islands were sampled to reveal macroalgal biodiversity from cryptic life stages, including species with microscopic thalli. We used the germling emergence (GE) method in combination with DNA barcoding of the 5’-end of the mitochondrial cytochrome c oxidase subunit 1 gene (COI) and the plastid-encoded large subunit of ribulose-1,5-bisphosphate carboxylase (rbcL) markers to identify algal species. The study of macroalgal microstages and microscopic species in situ is a challenging task, which was overcome by the germination and isolation of microscopic algal stages and microscopic species in vitro. This GE method has shown a potential for increasing the biogeographic and taxonomic knowledge on macroalgae (Peters et al. 2015). In fact, here we present three macroalgal species that were previously unreported from the Maltese islands and confirm the presence of another three algal species.

Materials and methods

Substratum samples, including small pebbles and shell fragments, as well as Posidonia oceanic (Linnaeus) Delile and Padina pavonica (Linnaeus) Thivy fragments, were collected from four sites in the Maltese islands (Tab. 1).

Isolate number Location Coordinates Site description Depth (m)
MT17-026 Saint Paul’s Bay, Malta 35°56.976' N Beneath Wignacourt Tower, 1
14°24.056' E on Posidonia oceanica leaf
MT17-059 Cirkewwa, Malta 35°59.162' N Near desalination plant outfall, 1.5
14°20.305' E on hard substratum
MT17-068 Cirkewwa, Malta 35°59.162' N Near desalination plant outfall, 1.5
14°20.305' E on large stone
MT17-092 Dwejra, Gozo 36°03.185' N Blue Hole, on hard substratum 18.4
14°11.283' E
MT17-099 Dwejra, Gozo 36°03.185' N Collapsed rock debris, 16.9
14°11.283' E fresh colonisation
MT17-100 Marsascala, Malta 35°52.036' N Close to wreck, 22
14°34.421' E from soft substratum
Tab. 1.Provenance of strains including spatial data collected by means of a hand-held Garmin 78s Marine Global Positioning System (GPS) device. All samples were found submerged in seawater.

Algal germlings were isolated from the substratum using the GE method (Peters et al. 2015), which involves the incubation of the substratum in a herbivore-free and nutrient-rich environment. The samples were cultured in 90 mm Petri dishes filled with 35 mL of Provasoli-enriched natural autoclaved seawater (Starr and Zeikus 1993, Coelho et al. 2012), incubated at 18 ºC and exposed to natural light. Clonal strains of filamentous algae were isolated after 1-3 months by cutting fragments of emerging algae under the stereomicroscope and transferring them into new dishes. Monoeukaryotic strains (Tab. 1) were obtained by sub-isolating few-celled thallus fragments.

The isolates were studied via light microscopy (Nikon Eclipse Ti-S inverted microscope connected to a Nikon Digital DS-Fi 1 camera). The keys in Cormaci et al. (2012) were used for morphological identification of the species.

DNA was extracted from each specimen using the DNeasy Plant Mini Kit (Qiagen, Hilden, Germany) according to the manufacturer’s protocol modified with a CTAB pre-treatment according to Gachon et al. (2009). The DNA was quantified using a Nanodrop 2000 spectrophotometer. Partial COI and rbcL genes, as well as the RuBisCO spacer, were amplified using the primer pairs listed in Tab. 2.

Biomarker Primer name Primer No. Sequence Reference
COI GazF2 1 CCAACCAYAAAGATATWGGTAC Lane et al. 2007
GazR2 2 GGATGACCAAARAACCAAAA Lane et al. 2007
DumR1 3 AAAAAYCARAATAAATGTTGA Saunders 2005
rbcL and RuBisCO spacer rbcLP2F/ rbcL40DF 4 GAWCGRACTCGAWTWAAAAGTG Kawai et al. 2007
rbcS139R 5 AGACCCCATAATTCCCAATA Peters and Ramírez 2001
rbcL rbcL1273F 6 GTGCGACAGCTAACCGTG Peters et al. 2010
rbcS139R 7 As above As above
Tab. 2.List of primers used in this study, including the target biomarker, name and sequence for each.

PCR amplifications were performed in a total volume of 50 μL, containing approximately 100 ng of DNA, a deoxynucleoside triphosphate mixture (0.2 mM each), supplemented to give a final concentration of 1.8 mM MgCl2, 0.625 U of OneTaq Quick Load 2× Master Mix with Standard Buffer (New England Biolabs, Inc.), 0.5 pmol of each primer and of 21 μL nuclease-free water.

Amplifications were carried out in a GeneAmp thermocycler PCR system 2700 (Applied Biosystems, Foster City, CA, USA) or T3000 thermocycler (Biometra, Jena, Germany) according to the PCR programmes listed in Tab. 3. PCR products were verified on 1% (w/v) agarose gel. PCR products were purified using a QIAquick PCR Purification Kit (Qiagen, Hilden, Germany) and sequenced via a BigDye Terminator v3.1 Cycle Sequencing Kit on an ABI 3730xl DNA analyser (Applied Biosystems, Foster City, California, USA) at Eurofins Genomics (Germany).

Primer pairs Initial Amplification Final extension Reference
Cycles Denaturation Annealing Elongation
1 and 2 4 min at 94 °C 38 1min at 94 °C 30 s at 50 °C 1min at 72 °C 7 min at 72 °C Lane et al. 2007
1 and 3 1min at 94 °C 35 1min at 94 °C 1.5 min at 50 °C 1min at 72 °C 5 min at 72 °C Peña et al. 2015
4 and 5 3 min at 95 °C 30 30 s at 95 °C 30 s at 55 °C 2 min at 72 °C 7 min at 72 °C Muñoz 2016
6 and 7 3 min at 95 °C 30 30 s at 95 °C 30 s at 55 °C 1 min at 72 °C 7 min at 72 °C Muñoz 2016
Tab. 3.PCR programme conditions used for each primer pair in this study.

The sequences were manually checked for correctness by inspecting the chromatograms and were compared to published sequences by the Basic Local Alignment Search Tool (BLAST) housed at the United States National Center of Biotechnology Information (Zhang et al. 2000). The nucleotide sequences obtained during this study were deposited in the DDBJ/GenBankTM/EBI Data Bank and Accession numbers are listed in Tab. 4.

Isolate number Identity rbcL + RuBisCO spacer COI
MT17-026 Sphacelaria sp. - MW580390
MT17-059 Colpomenia sinuosa MW659855 MW580391
MT17-068 Hecatonema terminale MW659856 MW580392
MT17-092 Striaria attenuata MW659857 -
MT17-099 Asperococcus bullosus MW659858 MW580393
MT17-100 Schizocladia ischiensis MW659859 -
Tab. 4.List of sequences produced in this study, with the corresponding NCBI accession number.

The biomarkers obtained were then analysed to arrive at the taxonomic identity of the algae. Taxonomic identities of algae based on molecular studies are highly dependent on the correct identification of DNA sequences in molecular databases, the degree of representation of the species concerned, and the percentage identity between the sequences being compared. The resolving power as species-level cut-off used for COI in the Ectocarpales was 1.8% (Peters et al. 2015). This barcode gap, previously identified empirically by Peters et al. (2015), was confirmed to range from 0.011 to 0.037 K2P pair-wise genetic distance in Ectocarpus (Montecinos et al. 2017), i.e. the equivalent of 1.1% to 3.7%. In fact, for all COI sequences in this study the species-level cut-off applied was more conservative, at 0.6%. In the case of the rbcL gene, a more conservative approach was applied, taking into consideration that the rbcL is less variable (Camacho et al. 2019), with the highest species-level cut-off used being 0.4%. This ensured that all species and genera presented in this study were identified only to the level at which there is high-level confidence.

A literature review was also conducted on Google Scholar to provide an updated macroalgal species list for Malta. The following terms were combined in the search: (“Macroalgae” OR “marine algae” OR “seaweeds” OR “algae” OR “brown algae” OR “Phaeophyceae” OR “Rhodophyta” OR “Chlorophyta” OR “green algae” OR “red algae” OR “alien algae”) AND (“Maltese islands” OR “Malta” OR “Gozo” OR “Comino”). This resulted in seven publications (Cormaci et al. 1997, Borg et al. 1998, Lanfranco et al. 1999, Schembri et al. 2005, Evans et al. 2015, Bonnici et al. 2018, ERA 2020). Further searches were conducted using the ‘distribution’ feature on AlgaeBase (Guiry and Guiry 2020). Moreover, AlgaeBase (Guiry and Guiry 2020) was also used to update the species names in the compiled list to reflect revisions in taxonomy.

Results

In this paper, we report 14 sequences based on surveys in the Maltese islands using COI, rbcL and the RuBisCO spacer. The results include four COI, five rbcL and five RuBisCO spacer barcodes. Tab. 5 provides the results of the BLAST searches including the length of sequence, the percentage identity with the closest hits, as well as the percentage query cover. The BLAST searches resulted in five strains being identified up to species-level and one strain up to genus-level as follows: Schizocladia ischiensis E.C. Henry, K. Okuda et H. Kawai (Schizocladiophyceae), Hecatonema terminale (Kützing) Kylin, Striaria attenuata (Greville) Greville, Colpomenia sinuosa (Mertens ex Roth) Derbès et Solier, Asperococcus bullosus J.V.Lamouroux and Sphacelaria sp.

Species name Strain Marker Length (bp) % Identity % Cover Accession Species name and locality
Colpomenia sinuosa MT17-059 rbcL 194 100 100 AF385839 Colpomenia sinuosa, Korea, Cho et al. 2001
Colpomenia sinuosa MT17- 059 spacer 189 97.4 100 AF385839 Colpomenia sinuosa, Korea, Cho et al. 2001
Colpomenia sp. MT17- 059 COI 538 97.3 95 KF281125 C. sinuosa, Australia, McDevit & Saunders, 2017
Sphacelaria sp. MT17- 026 COI 608 99.3 99 LM994971 Sphacelaria sp., Greece, Peters et al. 2015
Hecatonema terminale MT17- 068 COI 633 100 98 LM995391 H. maculans, Greece, Peters et al. 2015
Hecatonema terminale MT17- 068 rbcL 1403 99.9 100 AF207802 Hecatonema sp., unpublished
Hecatonema terminale MT17- 068 spacer 207 99.5 99 AF207802 Hecatonema sp., unpublished
Schizocladia ischiensis MT17- 100 rbcL 1006 99.8 100 MN996275 Schizocladia ischiensis, Italy, Rizouli et al. 2020
Schizocladia ischiensis MT17- 100 spacer 82 100 100 MN996275 Schizocladia ischiensis, Italy, Rizouli et al. 2020
Striaria attenuata MT17- 092 rbcL 194 100 100 AF055415 Striaria attenuata, Chile, Siemer et al. 1998
Striaria attenuata MT17- 092 spacer 181 98.3 100 AF055415 Striaria attenuata, Chile, Siemer et al. 1998
Asperococcus bullosus MT17- 099 rbcL 1427 99.6 96 LC016509 Asperococcus bullosus, Japan, Kawai et al. 2016
Asperococcus bullosus MT17- 099 spacer 178 91.2 100 AY095321 Asperococcus fistulosus, UK, Cho et al. 2003
Asperococcus bullosus MT17- 099 COI 625 99.8 99 MN184505 A. bullosus, Norway, Bringloe et al. 2019
Tab. 5.Results of BLAST searches including the length of sequence, percentage identity, query cover and details of the closest hit.

Schizocladia ischiensis is the only taxonomically accepted species in the genus Schizocladia (Guiry and Guiry 2020), and there are four rbcL sequences in GenBank representing the species. The rbcL (Tab. 5: 1006 bp) and RuBisCO spacer (Tab. 5: 82 bp) produced values of 99.8% and 100% identity respectively to the sequence with GenBank accession number MN996275 (Rizouli et al. 2020). This species identification was determined with a high level of confidence.

The genus Hecatonema currently includes 11 species (Guiry and Guiry 2020) and there are 42 COI and three rbcL sequences in GenBank representing this genus. The COI sequence (Tab. 5: 633 bp) produced a high identity (100%) with the sequence having GenBank accession number LM995391 (Peters et al. 2015, as Hecatonema maculans) and this was determined with a high level of confidence. In addition, the rbcL and RuBisCO spacer further confirmed this conclusion since the closest hit in GenBank was to an unpublished sequence of Hecatonema sp. (Accession no. AF207802).

Currently, there are 10 species that are accepted taxonomically in the genus Colpomenia (Guiry and Guiry 2020) and these are represented by 41 COI and 116 rbcL sequences in GenBank. The rbcL (Tab. 5: 194 bp) and RuBisCO spacer (Tab. 5: 189 bp) provided 100% and 97.4% identity, respectively, to the published C. sinuosa sequence with GenBank accession number AF385839 (Cho et al. 2001), and the species identification was determined with a high level of confidence. The COI sequence (Tab. 5: 538 bp) provided the closest hit (97.3% identity) to a sequence of C. sinuosa with accession number KF281125 (McDevit and Saunders 2017). The COI marker did not provide species identity.

Striaria attenuata is the only taxonomically accepted species in the genus (Guiry and Guiry 2020) and there is only one rbcL sequence in GenBank representing it. The rbcL (Tab. 5: 194 bp) and RuBisCO spacer (Tab. 5: 181 bp) provided 100% and 98.3% identity respectively to the published S. attenuata sequence having GenBank accession number AF055415 (Siemer et al. 1998).

There are 10 species currently accepted taxonomically in the genus Asperococcus, with six COI and 10 rbcL sequences in GenBank representing this genus. The COI sequence (Tab. 5: 625 bp) resulted in an identity of 99.8% to the A. bullosus sequence having GenBank accession no MN1184505 (Bringloe et al. 2019). In addition, the rbcL provided supporting information with a 99.6% level identity to the published A. bullosus sequence having GenBank accession number LC016509 (Kawai et al. 2016).

AlgaeBase currently lists 39 taxonomically accepted species for the genus Sphacelaria (Guiry and Guiry 2020), but only nine COI sequences are available in GenBank to represent these. The COI sequence (Tab. 5: 608 bp) gave a 99.3% identity to the Sphacelaria sp. sequence having GenBank accession number LM994971 (Peters et al. 2015). This genus-level identification was determined with high confidence.

It is evident that COI and rbcL together with the RuBisCO spacer reference sequences are not always available in GenBank, and when found, they are not always defined up to species-level.

Another result of this study is the updated marine algal species list for Malta, given in the on-line Suppl. Tab. 1. The species list now consists of 69 Phaeophyceae, 1 member of the Schizocladiophyceae, 194 Florideophyceae, 4 Bangiophyceae, 3 Compsopogonophyceae, 1 Palmophyllophyceae, 3 Stylonematophyceae and 63 Ulvophyceae. There are a total of 338 species, also including the new records discovered in this work.

Discussion

Through the combination of the GE method, isolation of strains and DNA barcoding targeting the cytoplasmic markers COI and rbcL plus the RuBisCO spacer, the heterokont benthic multicellular algae Schizocladia ischiensis (Schizocladiophyceae), Hecatonema terminale and Striaria attenuata (Phaeophyceae) are being reported for the first time from the waters around the Maltese islands in the central Mediterranean. For three additional brown algae, Colpomenia sinuosa, Asperococcus bullosus and Sphacelaria sp., DNA sequences confirmed previous morphology-based records in Malta (Cormaci et al. 1997, Borg et al. 1998). All the species and genera presented in this study are identified only to the level at which there is high-level confidence.

Schizocladia ischiensis (Fig. 1) was germinated from a substratum sample collected at Marsascala at a depth of 22 m. The thallus was made up of branched filaments of 3–7 μm diameter, each containing one or two brown parietal plastids. The zoospores, which have a teardrop-shape and an eyespot (Kawai et al. 2003), were not examined in this study. Molecular phylogenies indicate a close relationship to Phaeophyceae; however, Schizocladia belongs to a different class since it lacks cellulose and plasmodesmata in the cell wall and the presence of a flagellar transitional helix (Kawai et al. 2003). The class Schizocladiophyceae and the species S. ischiensis were originally described from a single strain (KU-333) isolated from substratum collected off the island of Ischia near Naples in Italy; the diagnosis was based on photosynthetic pigment analysis, morphology, and molecular phylogenies (Kawai et al. 2003). The rbcL and RuBisCO spacer sequences obtained for the Maltese isolate are almost identical to those from a S. ischiensis strain from Naples (Tab. 5: rbcL 99.8% identity and RuBisCO spacer 100% identity with MN996275, Rizouli et al. 2020), but slightly different from strain RH15-53 (rbcL 99.4% identity and RuBisCO spacer 97.6% identity to LC521905), a recent record off the Greek island of Rhodes (Rizouli et al. 2020).

Fig. 1.Light micrograph of Schizocladia ischiensis E.C. Henry, K. Okuda et H. Kawai strain from Malta.

A germling of H. terminale (Fig. 2) emerged from a stone fragment collected from Cirkewwa, Malta, at the outfall of a desalination plant. Species of the genus Hecatonema are confluent microscopic tufts that could also be solitary (Parente et al. 2010). They consist of a monostromatic basal layer, which in some places could be distromatic, from which unbranched or sparsely branched filaments arise (Fletcher 1987). Hecatonema terminale is abundant in Brittany and has been reported in the Mediterranean from Ischia and Naples in Italy, Korinthiakos Gulf, Korinthos in Greece (Peters et al. 2015, as Hecatonema maculans), as well as from Sicily (Giaccone et al. 1985). The family Hecatonemataceae (tribu Hecatonematees in Loiseaux, 1967) are currently placed within the Chordariaceae (Peters and Ramıirez 2001). COI sequences suggest that this clade might form a separate family (Peters et al. 2015), but this is yet to be confirmed by multi-gene phylogenies. The comparison with COI sequences deposited in GenBank shows that the sequence obtained for the Maltese isolate is identical to that of strain GR11-52B from Greece (Tab. 5: 100% identity to LM995391, Peters et al. 2015).

Fig. 2.Light micrograph of the Hecatonema terminale (Kützing) Kylin strain from Malta.

Colpomenia sinuosa (Fig. 3) was isolated from a pebble collected at a depth of 1.5 m at the outfall of the same desalination plant in Cirkewwa. Preliminary morphological identification indicated the strain belonged to C. sinuosa, the type species of this genus, which was then confirmed through sequencing of the rbcL and RuBisCO markers, which gave a high percentage identity to a strain from Jeju, Korea (Tab. 5: rbcL 100% identity and RuBisCO spacer 97.4% identity to AF385839, Cho et al. 2001). The COI gene provided a 97.3% identity to C. sinuosa (Tab. 5: KF281125, McDevit and Saunders, 2017). There are only eight COI sequences for C. sinuosa on GenBank and they all originate from Korea (two sequences) or Australia (six sequences). The comparison with COI sequences deposited in GenBank shows that the Maltese isolate could be a cryptic species. Cryptic speciation in C. sinuosa has been studied through the use of the rbcL and cox3 gene, which have shown that there are three main genetic groups (Lee et al. 2013). The rbcL of the Maltese isolate provided the highest identity (99.6, 100 and 100% respectively) to AY398468, AB022234, AB578988, i.e. C. sinuosa Group 1 in Lee et al. (2013). Group 1 is the most diverse group and includes five subgroups from both temperate and tropical waters. However, it is probable that there are no COI sequences in GenBank for this group. Further molecular investigations are thus required for C. sinuosa, especially to sequence the COI gene from specimen growing in different areas including the type locality in Cadiz, Spain (Guiry and Guiry, 2020), as well as from different areas in the Mediterranean Sea.

Fig. 3.Light micrograph of Colpomenia sinuosa (Mertens ex Roth) Derbès et Solier strain from Malta.

Colpomenia sinuosa occurs intertidally and subtidally (Cho et al. 2009) and is widespread in temperate and warm waters, penetrating boreal waters (Guiry and Guiry, 2020). Colpomenia sinuosa and C. peregrina Sauvageau, both have a spherical and saccate appearance and both occur around Malta. The main difference between the two is that C. sinuosa has plurilocular sporangial punctate sori with a cuticle and four to six layers of medullary cells, as opposed to extensive sori without a cuticle and a thinner thallus wall of three to four layers of colourless medullary cells in C. peregrina (Toste et al. 2003).

For this study, S. attenuata and A. bullosus specimens were collected in Gozo from the Blue Hole at Dwejra. Previously, the presence of S. attenuata had been recorded in different Mediterranean locations including Sicily (Giaccone et al. 1985) and Karpasia in Cyprus (Tsiamis et al. 2014), but it had never been identified from the Maltese islands. On the other hand, A. bullosus had been morphologically identified in the north-eastern coast of Malta (Borg et al. 1998). The analysis of the new biomarkers of S. attenuata obtained in this study resulted in a high percentage identity to strain Sat 49 from Chile (Tab. 5: rbcL 100% identity and RuBisCO spacer 98.3% identity to AF055415, Siemer et al. 1998). The sequences obtained for A. bullosus gave a high percentage identity to strain KU-570 from Japan and strain GWS040819 from Norway (Tab. 5: rbcL 99.6% identity to LC016509, Kawai et al. 2016 and COI 99.8% identity to MN184505, Bringloe et al. 2019).

The Sphacelaria sp. isolate collected from an algal tuft on Padina sp. in St Paul’s Bay, had a high percentage identity to Strain GR11-34 (Tab. 5: COI 99.3% identity to LM994971, Peters et al. 2015) collected from Kavouri (Greece). In this case, the species identity is not obvious, possibly due to the dearth of Sphacelariales COI sequences in the public databases that are attributable to primer mismatches (Peters et al. 2015). In fact, there are only nine COI sequences available in GenBank representing the genus Sphacelaria, which is a highly limited number compared to the 39 species that currently make up this genus (Guiry and Guiry 2020). Thus, further molecular investigations are urgently required for the genus Sphacelaria. Other species of Sphacelaria that have been previously recorded from the Maltese islands on the basis of morphology include S. cirrosa (Roth) C.Agardh, S. fusca (Hudson) S.F.Gray, S. plumula Zanardini, S. rigidula Kützing and S. tribuloides Meneghini (Cormaci et al. 1997).

For the Phaeophyceae, our results confirm that the RuBisCO spacer is more variable than rbcL (Tab. 5) and that this spacer, in combination with other biomarkers, such as cox2-3, could be used to study intraspecific groups in biogeographic studies (Cho et al. 2007).

It is important to note that only C. sinuosa, A. bullosus and Sphacelaria sp. were recorded through the application of morphological surveys and the GE method coupled with DNA barcoding. Thus, without the latter part, our study would have overlooked S. ischiensis, S. attenuata and H. terminale. Thus, our results indicate that algal isolation and culturing in combination with DNA barcoding is a useful unbiased tool to reveal overlooked biodiversity. It also shows that sediment and other substrata, such as pebbles, represent an unexplored environment that harbours countless cryptic microstages of macroalgae with potential for the detection of species. This same method could also be used to detect new introductions of non-indigenous species to the Mediterranean at an early stage. The method also suggests that ‘eradicating’ non-indigenous species by removing the macrothalli is impractical since most algae may exist as microstages in the sediment itself. The GE method certainly has a strong potential to enhance algal biodiversity checklists and is both cost-effective with a low environmental impact in comparison to ship- or ROV-based surveys, such as those targeting deep-water / circalittoral algal communities in the Eastern Mediterranean (Küpper et al. 2019).

Finally, this study provides an updated checklist of marine macroalgal species present in Maltese waters (On-line Suppl. Tab. 1). This was important as it was a challenge to search records of Maltese macroalgae, because these had not been revised since 1997 (Cormaci et al. 1997). Species names were updated to reflect revisions in taxonomy. For instance, previous mentions of Aglaothamnion byssoides and A. tenuissimum have now been recorded as one species in the updated list, A. tenuissimum (Bonnemaison) Feldmann-Mazoyer. Moreover, any references to misidentified algae, such as Asparagopsis armata, which does not occur in Malta (Evans et al. 2015), were removed.

References

  1. Bartolo AG, Zammit G, Peters AF, Küpper FC. The current state of DNA barcoding of macroalgae in the Mediterranean Sea: presently lacking but urgently required.. Bot Mar. 2020; 63:253-72. DOI
  2. Bonnici L, Borg JA, Evans J, Lanfranco S, Schembri PJ. Of rocks and hard places: Comparing biotic assemblages on concrete jetties versus natural rock along a microtidal Mediterranean shore.. J Coast Res. 2018; 34:1136-48. DOI
  3. Borg JA, Howege HM, Lanfranco E, Micallef S, Mifsud C, Schembri PJ. The macrobenthic species of the infralittoral to circalittoral transition zone off the northeastern coast of Malta (Central Mediterranean).. Xjenza. 1998; 3:16-24.
  4. Bringloe TT, Sjøtun K, Saunders GW. A DNA barcode survey of marine macroalgae from Bergen (Norway).. Mar Biol Res. 2019; 15:580-9. DOI
  5. Camacho O, Fernández‐García C, Vieira C, Gurgel CFD, Norris JN, Freshwater DW. The systematics of Lobophora (Dictyotales, Phaeophyceae) in the western Atlantic and eastern Pacific oceans: eight new species.. J Phycol. 2019; 55:611-24. DOI | PubMed
  6. Cho GY, Yoon HS, Choi HG, Kogame K, Boo SM. Phylogeny of the family Scytosiphonaceae (Phaeophyta) from Korea based on sequences of plastid-encoded RuBisCo spacer region.. Algae. 2001; 16:145-50.
  7. Cho TO, Cho GY, Yoon HS, Boo SM, Lee WJ. New records of Myelophycus cavus (Scytosiphonaceae, Phaeophyceae) in Korea and the taxonomic position of the genus on the basis of a plastid DNA phylogeny.. Nova Hedwigia. 2003; 76:381-98. DOI
  8. Cho GY, Kogame K, Kawai H, Min Boo S. Genetic diversity of Scytosiphon lomentaria (Scytosiphonaceae, Phaeophyceae) from the Pacific and Europe based on RuBisCO large subunit and spacer, and ITS nrDNA sequences.. Phycologia. 2007; 46:657-65. DOI
  9. Cho GY, Choi DW, Kim MS, Boo SM. Sequence repeats enlarge the internal transcribed spacer 1 region of the brown alga Colpomenia sinuosa (Scytosiphonaceae, Phaeophyceae).. Phycol Res. 2009; 57:242-50. DOI
  10. Coelho SM, Scornet D, Rousvoal S, Peters N, Dartevelle L, Peters AF. How to cultivate Ectocarpus.. Cold Spring Harb Protoc. 2012; 2012:258-61. DOI | PubMed
  11. Cormaci M, Lanfranco E, Borg JA, Buttigieg S, Furnari G, Micallef SA. Contribution to the knowledge of benthic marine algae on rocky substrata of the Maltese Islands (Mediterranean Sea).. Bot Mar. 1997; 40:203-16. DOI
  13. Evans J, Barbara J, Schembri PJ. Updated review of marine alien species and other ‘newcomers’ recorded from the Maltese Islands (Central Mediterranean).. Mediterr Mar Sci. 2015; 16:225-44. DOI
  14. Publisher Full Text
  16. Gachon CM, Strittmatter M, Müller DG, Kleinteich J, Küpper FC. Detection of differential host susceptibility to the marine oomycete pathogen Eurychasma dicksonii by real-time PCR: not all algae are equal.. Appl Environ Microbiol. 2009; 75:322-8. DOI | PubMed
  17. Giaccone G, Colonna P, Graziano C. Revisione della flora marina di Sicilia e isole minori.. Bolletino Accademia Gioenia Scienze Naturali Catania. 1985; 18:537-781.
  18. Publisher Full Text
  19. Kawai H, Maeba S, Sasaki H, Okuda K, Henry EC. Schizocladia ischiensis: a new filamentous marine chromophyte belonging to a new class, Schizocladiophyceae.. Protist. 2003; 154:211-28. DOI | PubMed
  20. Kawai H, Hanyuda T, Draisma SG, Müller DG. Molecular phylogeny of Discosporangium mesarthrocarpum (Phaeophyceae) with a reinstatement of the order Discosporangiales 1.. J Phycol. 2007; 43:186-94. DOI
  21. Kawai H, Hanyuda T, Kim SH, Ichikawa Y, Uwai S, Peters AF. Cladosiphon takenoensis sp. nov. (Ectocarpales sl., Phaeophyceae) from Japan.. Phycol Res. 2016; 64:212-8. DOI
  22. Küpper FC, Tsiamis K, Johansson NR, Peters AF, Salomidi M, Manousakis L. New records of the rare deep-water alga Sebdenia monnardiana (Rhodophyta) and the alien Dictyota cyanoloma (Phaeophyta) and the unresolved case of deep-water kelp in the Ionian and Aegean Seas (Greece).. Bot Mar. 2019; 62:577-86. DOI
  23. Lane CE, Lindstrom SC, Saunders GW. A molecular assessment of northeast Pacific Alaria species (Laminariales, Phaeophyceae) with reference to the utility of DNA barcoding.. Mol Phylogenet Evol. 2007; 44:634-48. DOI | PubMed
  24. Lanfranco E, Rizzo M, Hall-Spencer J, Borg JA, Schembri PJ. Maerl-forming coralline algae and associated phytobenthos from the Maltese Islands.. The Central Mediterranean Naturalist. 1999; 3:1-6.
  25. Lee KM, Boo SM, Kain JM, Sherwood AR. Cryptic diversity and biogeography of the widespread brown alga Colpomenia sinuosa (Ectocarpales, Phaeophyceae).. Bot Mar. 2013; 56:15-25. DOI
  26. McDevit D, Saunders GW. A molecular investigation of Canadian Scytosiphonaceae (Phaeophyceae) including descriptions of Planosiphon gen. nov. and Scytosiphon promiscuous sp. nov.. Botany. 2017; 95:653-71. DOI
  27. Montecinos AE, Couceiro L, Peters AF, Desrut A, Valero M, Guillemin ML. Species delimitation and phylogeographic analyses in the Ectocarpus subgroup siliculosi (Ectocarpales, Phaeophyceae).. J Phycol. 2017; 53:17-31. DOI | PubMed
  29. Parente MI, Fletcher RL, Neto A, Tittley I, Sousa AF, Draisma S. Life history and morphological studies of Punctaria tenuissima (Chordariaceae, Phaeophyceae), a new record for the Azores.. Bot Mar. 2010; 53:223-31. DOI
  30. Payo DA, Leliaert F, Verbruggen H, D’hondt S, Calumpong HP, De Clerck O. Extensive cryptic species diversity and fine-scale endemism in the marine red alga Portieria in the Philippines.. Proc Biol Sci. 2012; 280DOI | PubMed
  31. Peña V, De Clerck O, Afonso-Carrillo J, Ballesteros E, Bárbara I, Barreiro R. An integrative systematic approach to species diversity and distribution in the genus Mesophyllum (Corallinales, Rhodophyta) in Atlantic and Mediterranean Europe.. Eur J Phycol. 2015; 50:20-36. DOI
  32. Peters AF, Ramírez ME. Molecular phylogeny of small brown algae, with special reference to the systematic position of Caepidium antarcticum (Adenocystaceae, Ectocarpales).. Cryptogam, Algol. 2001; 22:187-200. DOI
  33. Peters AF, Van Wijk SJ, Cho GY, Scornet D, Hanyuda T, Kawai H. Reinstatement of Ectocarpus crouaniorum Thuret in Le Jolis as a third common species of Ectocarpus (Ectocarpales, Phaeophyceae) in Western Europe, and its phenology at Roscoff, Brittany.. Phycol Res. 2010; 58:157-70. DOI
  34. Peters AF, Couceiro L, Tsiamis K, Küpper FC, Valero M. Barcoding of cryptic stages of marine brown algae isolated from incubated substratum reveals high diversity in Acinetosporaceae (Ectocarpales, Phaeophyceae) 1.. Cryptogam, Algol. 2015; 36:3-30. DOI
  35. Rizouli A, Küpper FC, Louizidou P, Mogg A, Azzopardi E, Sayer MDJ. The minute chromophyte alga Schizocladia ischiensis (Schizocladiophyceae, Ochrophyta) raised by germling emergence from substratum collected at 24m depth off Rhodes (Dodecanese, Greece).. Diversity (Basel). 2020; 12(3):102. DOI
  36. Saunders GW. Applying DNA barcoding to red macroalgae: a preliminary appraisal holds promise for future applications.. Philos Trans R Soc Lond B Biol Sci. 2005; 360:1879-88. DOI | PubMed
  37. Schembri PJ, Deidun A, Mallia A, Mercieca L. Rocky shore biotic assemblages of the Maltese Islands (Central Mediterranean): a conservation perspective.. J Coast Res. 2005; 21:157-66. DOI
  38. Siemer BL, Stam WT, Olsen JL, Pedersen PM. Phylogenetic relationships of the brown algal orders Ectocarpales, Chordariales, Dictyosiphonales, and Tilopteridales (Phaeophyceae) based on RuBisCO large subunit and spacer sequences.. J Phycol. 1998; 34:1038-48. DOI
  39. Starr RC, Zeikus JA. UTEX-The culture collection of algae at the University of Texas at Austin.. J Phycol. 1993; 29:1-106. DOI
  40. Toste MF, Parente MI, Neto AI, Fletcher RL. Life history of Colpomenia sinuosa (Syctosiphonaceae Phaeophyceae) in the Azores.. J Phycol. 2003; 39:1268-74. DOI
  41. Tronholm A, Leliaert F, Sansón M, Afonso-Carrillo J, Tyberghein L, Verbruggen H. Contrasting geographical distributions as a result of thermal tolerance and long-distance dispersal in two allegedly widespread tropical brown algae.. PLoS One. 2012; 7(1)DOI | PubMed
  42. Tsiamis K, Taşkın E, Orfanidis S, Stavrou P, Argyrou M, Panayotidis P. Checklist of seaweeds of Cyprus (Mediterranean Sea).. Bot Mar. 2014; 57:153-66. DOI
  43. Vieira C, Camacho O, Sun Z, Fredericq S, Leliaert F, Payri C. Historical biogeography of the highly diverse brown seaweed Lobophora (Dictyotales, Phaeophyceae).. Mol Phylogenet Evol. 2017; 110:81-92. DOI | PubMed
  44. Zhang Z, Schwartz S, Wagner L, Miller W. A greedy algorithm for aligning DNA sequences.. J Comput Biol. 2000; 7:203-14. DOI | PubMed

Main Article Content

Abstract

The heterokont benthic multicellular algae Schizocladia ischiensis E.C. Henry, K. Okuda et H. Kawai (Schizocladiophyceae), Hecatonema terminale (Kützing) Kylin and Striaria attenuata (Greville) Greville (Phaeophyceae) are reported for the first time from the waters around the Maltese islands in the central Mediterranean. They were identified through algal isolation from incubated natural substrata, coupled with DNA barcoding targeting the biomarkers COI and rbcL plus the RuBisCO spacer. For three additional brown algae, Colpomenia sinuosa (Mertens ex Roth) Derbès et Solier, Asperococcus bullosus J.V.Lamouroux and Sphacelaria sp., DNA sequences confirmed previous morphology-based records from Malta. This paper also provides an updated literature-based species list of the marine macroalgae present in Malta.

Keywords

DNA Barcoding germling emergence macroalgae Malta Mediterranean Sea Phaeophyceae Schizocladiophyceae.

Article Details

License

Copyright (c) 2021 Angela G. Bartolo, Gabrielle Zammit, Hannah Russell, Akira F. Peters, Frithjof C. Küpper

Creative Commons License

This work is licensed under a Creative Commons Attribution-NonCommercial 4.0 International License.

Acta Botanica Croatica is an Open Access journal with minimal restrictions regarding content reuse. Immediately after publishing, all content becomes freely available to anyone for unlimited use and distribution, under the sole condition that the author(s) and the original source are properly attributed according to the Creative Commons Attribution 4.0 International License (CC BY 4.0).

CC BY 4.0 represents the highest level of Open Access, which maximizes dissemination of scholarly work and protects the rights of its authors. In Acta Botanica Croatica, authors hold the copyright of their work and retain unrestricted publishing rights.

By approving final Proof the authors grant to the publisher exclusive license to publish their article in print and on-line, in accordance with the Creative Commons Attribution (CC-BY-4.0) license.

How to Cite
Bartolo, A. G., Zammit, G., Russell, H., Peters, A. F., & Küpper , F. C. (2021). DNA barcoding of marine algae from Malta: new records from the central Mediterranean. Acta Botanica Croatica, 80(2), 176–183. https://doi.org/10.37427/botcro-2021-020
Download Citation
Endnote/Zotero/Mendeley (RIS)
BibTeX

Similar Articles

<< < 5 6 7 8 9 10 11 12 13 14 > >> 

You may also start an advanced similarity search for this article.